CDR Comparison FASTA Sequences csv Tables Mutation Table
Sequence Analyses:
1. Example
-----------------------
a) LIGHT CHAIN
-----------------------
Alignment for V segment (Example L)
Example_L score CTGCCTGTGCTGACTCAGCCCCCCTCA___GCGTCTGGGACCCCCGGGCAGAGGGTCACCATCTCTTGTTCTGGAAGCAGCTCCAACATCGGAAGTAATACT____________GTAAACTGGTACCAGCAGCTCCCAGGAACGGCCCCCAAACTCCTCATCTATAGTAATAAT_____________________CAGCGGCCCTCAGCGGTCCCT___GACCGATTCTCTGGCTCCAAG______TCTGGCACCTCAGCCTCCCTGGCCATCAGTGGGCTCCGGTCCGAGGATGAGGGTGATTATTACTGTGCAGCATGGGATGACAGCCTGAATGGTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
humIGLV063 1377 .A.T................A......___........................................................................____________............................................................_____________________.............G.......___.....................______.....................................A...T..........C..................................
humIGLV059 1368 .A.T................A......___.....................................................................TA.____________...T........................................................_____________________.............G.......___.....................______....................................................C..................................
humIGLV130 1359 .A.T................A......___.....................................................................TA.____________...T.................................................G......_____________________.............G.......___.....................______....................................................C..................................
humIGLV069 1215 .A.T................A.....G___.T.....AAG.....A...................C............................A....G..____________............................A...T..................TA.G..G.._____________________.T..T........G....T..___.....................______.....................................A...T..........C..................................
humIGLV056 1071 .A.T..........G.....G......___.T.......G....A....................C..CA....G..............T..GGCGGG.TA.GTT_________...C.T..............T........A.....................G....C.GC_____________________A.T..........G.......___....A................______............................C...A....A...T..........C............CAA..........A........
Your sequence uses a V segment of the IGLV1 family.
Alignment for J segment (Example L)
Example_L score TGTGCAGCATGGGATGACAGCCTGAATGGTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
M15642 IGLJ3*01 190 _____________________________......................................
M15641 IGLJ2*01 190 _____________________________......................................
D87023 IGLJ3*02 163 _____________________________.TG...G...............................
Junction (Example L) (V P N P J)
Example_L TGTGCAGCATGGGATGACAGCCTGAATGGTGTGGTATTC
Translation of the Junction (Example L)
Example_L CAAWDDSLNGVVF
104 105 106 107 108 109 110 113 114 115 116 117 118
C A A W D D S L N G V V F
Example_L TGT GCA GCA TGG GAT GAC AGC CTG AAT GGT GTG GTA TTC
CDR Analysis (Example L)
----CDR1---> <--CDR2--> <---CDR3----
Example_L SSNIGSNT....___SNN.......___AAWDDSLNGVV
Amino Acid Sequence in FASTA format (Example L)
> Example L
LPVLTQPPSASGTPGQRVTISCSGSSSNIGSNTVNWYQQLPGTAPKLLIYSNNQRPSAVPDRFSGSKSGTSASLAISGLRSEDEGDYYCAAWDDSLNGVVFGGGTKLTVL
Nucleotide Sequence in FASTA format (Example L)
> Example L
CTGCCTGTGCTGACTCAGCCCCCCTCAGCGTCTGGGACCCCCGGGCAGAGGGTCACCATCTCTTGTTCTGGAAGCAGCTCCAACATCGGAAGTAATACTGTAAACTGGTACCAGCAGCTCCCAGGAACGGCCCCCAAACTCCTCATCTATAGTAATAATCAGCGGCCCTCAGCGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCAGTGGGCTCCGGTCCGAGGATGAGGGTGATTATTACTGTGCAGCATGGGATGACAGCCTGAATGGTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
V segment (Example L)
<---------------------- F R 1 - I M G T ---------------------------------------------->
1 5 10 15 20 25
Example_L CTG CCT GTG CTG ACT CAG CCC CCC TCA ... GCG TCT GGG ACC CCC GGG CAG AGG GTC ACC ATC TCT TGT TCT GGA AGC
humIGLV063 288 bp -A- T-- --- --- --- --- --A --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
humIGLV059 288 bp -A- T-- --- --- --- --- --A --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
humIGLV130 288 bp -A- T-- --- --- --- --- --A --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
humIGLV069 288 bp -A- T-- --- --- --- --- --A --- --G ... -T- --- -AA G-- --- A-- --- --- --- --- --- --C --- --- --- ---
humIGLV056 291 bp -A- T-- --- --- --G --- --G --- --- ... -T- --- --- G-- --A --- --- --- --- --- --- --C --C A-- --G ---
___________________ CDR1 - IMGT _______________ <------------------- F R 2 - I M G T
30 35 40 45 50
Example_L AGC TCC AAC ATC GGA AGT AAT ACT ... ... ... ... GTA AAC TGG TAC CAG CAG CTC CCA GGA ACG GCC CCC AAA CTC
humIGLV063 288 bp --- --- --- --- --- --- --- --- ... ... ... ... --- --- --- --- --- --- --- --- --- --- --- --- --- ---
humIGLV059 288 bp --- --- --- --- --- --- --- TA- ... ... ... ... --- T-- --- --- --- --- --- --- --- --- --- --- --- ---
humIGLV130 288 bp --- --- --- --- --- --- --- TA- ... ... ... ... --- T-- --- --- --- --- --- --- --- --- --- --- --- ---
humIGLV069 288 bp --- --- --- --- --- -A- --- G-- ... ... ... ... --- --- --- --- --- --- --- --- --- -A- --T --- --- ---
humIGLV056 291 bp --- --- --- --T --G GCG GG- TA- GTT ... ... ... --- C-T --- --- --- --- --T --- --- --A --- --- --- ---
----------> ___________ CDR2 - IMGT _______________ <---------------------------------------------------
55 60 65 70 75
Example_L CTC ATC TAT AGT AAT AAT ... ... ... ... ... ... ... CAG CGG CCC TCA GCG GTC CCT ... GAC CGA TTC TCT GGC
humIGLV063 288 bp --- --- --- --- --- --- ... ... ... ... ... ... ... --- --- --- --- -G- --- --- ... --- --- --- --- ---
humIGLV059 288 bp --- --- --- --- --- --- ... ... ... ... ... ... ... --- --- --- --- -G- --- --- ... --- --- --- --- ---
humIGLV130 288 bp --- --- --- --G --- --- ... ... ... ... ... ... ... --- --- --- --- -G- --- --- ... --- --- --- --- ---
humIGLV069 288 bp --- --- --- TA- G-- G-- ... ... ... ... ... ... ... -T- -T- --- --- -G- --- T-- ... --- --- --- --- ---
humIGLV056 291 bp --- --- --- G-- --C -GC ... ... ... ... ... ... ... A-T --- --- --- -G- --- --- ... --- -A- --- --- ---
------- F R 3 - I M G T -------------------------------------------------------------->
80 85 90 95 100
Example_L TCC AAG ... ... TCT GGC ACC TCA GCC TCC CTG GCC ATC AGT GGG CTC CGG TCC GAG GAT GAG GGT GAT TAT TAC TGT
humIGLV063 288 bp --- --- ... ... --- --- --- --- --- --- --- --- --- --- --- --- -A- --T --- --- --- -C- --- --- --- ---
humIGLV059 288 bp --- --- ... ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -C- --- --- --- ---
humIGLV130 288 bp --- --- ... ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -C- --- --- --- ---
humIGLV069 288 bp --- --- ... ... --- --- --- --- --- --- --- --- --- --- --- --- -A- --T --- --- --- -C- --- --- --- ---
humIGLV056 291 bp --- --- ... ... --- --- --- --- --- --- --- --- --- -C- --A --- -A- --T --- --- --- -C- --- --- --- --C
_______________ CDR3 - IMGT _______________ <-------------- FR4 - IMGT ----------->
105 110 113 115 120 125
Example_L GCA GCA TGG GAT GAC AGC CTG AAT GGT GTG GTA TTC GGC GGA GGG ACC AAG CTG ACC GTC CTA G
humIGLV063 288 bp --- --- --- --- --- --- ---
humIGLV059 288 bp --- --- --- --- --- --- ---
humIGLV130 288 bp --- --- --- --- --- --- ---
humIGLV069 288 bp --- --- --- --- --- --- ---
humIGLV056 291 bp AA- --- --- --- A-- --- ---
Translation of the V segment (Example L)
<---------------------- F R 1 - I M G T ---------------------------------------------->
1 5 10 15 20 25
L P V L T Q P P S A S G T P G Q R V T I S C S G S
Example_L CTG CCT GTG CTG ACT CAG CCC CCC TCA ... GCG TCT GGG ACC CCC GGG CAG AGG GTC ACC ATC TCT TGT TCT GGA AGC
Q S
humIGLV063 288 bp -A- T-- --- --- --- --- --A --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
___________________ CDR1 - IMGT _______________ <------------------- F R 2 - I M G T
30 35 40 45 50
S S N I G S N T V N W Y Q Q L P G T A P K L
Example_L AGC TCC AAC ATC GGA AGT AAT ACT ... ... ... ... GTA AAC TGG TAC CAG CAG CTC CCA GGA ACG GCC CCC AAA CTC
humIGLV063 288 bp --- --- --- --- --- --- --- --- ... ... ... ... --- --- --- --- --- --- --- --- --- --- --- --- --- ---
----------> ___________ CDR2 - IMGT _______________ <---------------------------------------------------
55 60 65 70 75
L I Y S N N Q R P S A V P D R F S G
Example_L CTC ATC TAT AGT AAT AAT ... ... ... ... ... ... ... CAG CGG CCC TCA GCG GTC CCT ... GAC CGA TTC TCT GGC
G
humIGLV063 288 bp --- --- --- --- --- --- ... ... ... ... ... ... ... --- --- --- --- -G- --- --- ... --- --- --- --- ---
------- F R 3 - I M G T -------------------------------------------------------------->
80 85 90 95 100
S K S G T S A S L A I S G L R S E D E G D Y Y C
Example_L TCC AAG ... ... TCT GGC ACC TCA GCC TCC CTG GCC ATC AGT GGG CTC CGG TCC GAG GAT GAG GGT GAT TAT TAC TGT
Q A
humIGLV063 288 bp --- --- ... ... --- --- --- --- --- --- --- --- --- --- --- --- -A- --T --- --- --- -C- --- --- --- ---
_______________ CDR3 - IMGT _______________ <-------------- FR4 - IMGT ----------->
105 110 113 115 120 125
A A W D D S L N G V V F G G G T K L T V L
Example_L GCA GCA TGG GAT GAC AGC CTG AAT GGT GTG GTA TTC GGC GGA GGG ACC AAG CTG ACC GTC CTA G
humIGLV063 288 bp --- --- --- --- --- --- ---
Back to the List of Sequence Analyses
-----------------------
b) HEAVY CHAIN
-----------------------
Alignment for V segment (Example H)
Example_H score CAGGTGCAGCTGCAGCAGTGGGGGGGA___GGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGCT____________ATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGCAATAAA______TACTACGCAGACTCCGTGAAG___GGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGAGATCGTTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAAAGCTTGAAGAAGGTGAATTTTCAGAAGCACGCGTA
humIGHV047 1416 ............GT.G...CT......___........................................................................____________....................................................................T......______.....................___...................................................................................................
humIGHV050 1407 ............GT.G...CT......___........................................................................____________...................................A................................T......______.....................___...................................................................................................
humIGHV195 1389 ............GT.G...CT......___......................................................................GC____________....................................................................T......______.....T...............___...................................................................................................
humIGHV199 1353 ............GT.G...CT......___............................................G.........................GC____________.......................................................GG...........T......______.....T...............___....................................................................C..............................
humIGHV029 1317 .....A......GT.G...CT......___............................................G.........................GC____________.......................................................GG...........T......______.....T..........C....___...............................C...........T........................C..............................
Your sequence uses a V segment of the IGHV3 family.
Alignment for D segment (Example H)
Example_H score GATCGT
X13972 IGHD3-9*01inv 48.5 T.....AATAC
X13972 IGHD3-3*01inv 48.5 A.....AATAC
X13972 IGHD5-12*01inv 48.5 A.....AGCCACTATATCCAC
Alignment for J segment (Example H)
Example_H score TGTGCGAGAGATCGTTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAAAGCTTGAAGAAGGTGAATTTTCAGAAGCACGCGTA
X86355 IGHJ6*02 202 _A.TACTACT.CTAC................................................
J00256 IGHJ6*01 198 _A.TACTACT.CTAC....................G............................
J00256 IGHJ3*01 168 ________________.T.C.T.T..T.................A.T............T....
Junction (Example H) (V P N P D P N P J)
Example_H TGTGCGAGAGATCGTTACGGTATGGACGTCTGG
Translation of the Junction (Example H)
Example_H CARDRYGMDVW
104 105 106 107 108 109 114 115 116 117 118
C A R D R Y G M D V W
Example_H TGT GCG AGA GAT CGT TAC GGT ATG GAC GTC TGG
CDR Analysis (Example H)
----CDR1---> <--CDR2--> <---CDR3----
Example_H GFTFSSYA....___ISYDGSNK..___ARDRYGMDV
Amino Acid Sequence in FASTA format (Example H)
> Example H
QVQLQQWGGGVVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARDRYGMDVWGQGTTVTVSS
Nucleotide Sequence in FASTA format (Example H)
> Example H
CAGGTGCAGCTGCAGCAGTGGGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGCTATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGCAATAAATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGAGATCGTTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
V segment (Example H)
<---------------------- F R 1 - I M G T ---------------------------------------------->
1 5 10 15 20 25
Example_H CAG GTG CAG CTG CAG CAG TGG GGG GGA ... GGC GTG GTC CAG CCT GGG AGG TCC CTG AGA CTC TCC TGT GCA GCC TCT
humIGHV047 294 bp --- --- --- --- GT- G-- -CT --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
humIGHV050 294 bp --- --- --- --- GT- G-- -CT --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
humIGHV195 294 bp --- --- --- --- GT- G-- -CT --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
humIGHV199 294 bp --- --- --- --- GT- G-- -CT --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- --G ---
humIGHV029 294 bp --- --A --- --- GT- G-- -CT --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- --G ---
___________________ CDR1 - IMGT _______________ <------------------- F R 2 - I M G T
30 35 40 45 50
Example_H GGA TTC ACC TTC AGT AGC TAT GCT ... ... ... ... ATG CAC TGG GTC CGC CAG GCT CCA GGC AAG GGG CTG GAG TGG
humIGHV047 294 bp --- --- --- --- --- --- --- --- ... ... ... ... --- --- --- --- --- --- --- --- --- --- --- --- --- ---
humIGHV050 294 bp --- --- --- --- --- --- --- --- ... ... ... ... --- --- --- --- --- --- --- --- --- --- --- --A --- ---
humIGHV195 294 bp --- --- --- --- --- --- --- -GC ... ... ... ... --- --- --- --- --- --- --- --- --- --- --- --- --- ---
humIGHV199 294 bp --- --- --- --- --- --- --- -GC ... ... ... ... --- --- --- --- --- --- --- --- --- --- --- --- --- ---
humIGHV029 294 bp --- --- --- --- --- --- --- -GC ... ... ... ... --- --- --- --- --- --- --- --- --- --- --- --- --- ---
----------> ___________ CDR2 - IMGT _______________ <---------------------------------------------------
55 60 65 70 75
Example_H GTG GCA GTT ATA TCA TAT GAT GGA AGC AAT AAA ... ... TAC TAC GCA GAC TCC GTG AAG ... GGC CGA TTC ACC ATC
humIGHV047 294 bp --- --- --- --- --- --- --- --- --T --- --- ... ... --- --- --- --- --- --- --- ... --- --- --- --- ---
humIGHV050 294 bp --- --- --- --- --- --- --- --- --T --- --- ... ... --- --- --- --- --- --- --- ... --- --- --- --- ---
humIGHV195 294 bp --- --- --- --- --- --- --- --- --T --- --- ... ... --- --T --- --- --- --- --- ... --- --- --- --- ---
humIGHV199 294 bp --- --- --- --- -GG --- --- --- --T --- --- ... ... --- --T --- --- --- --- --- ... --- --- --- --- ---
humIGHV029 294 bp --- --- --- --- -GG --- --- --- --T --- --- ... ... --- --T --- --- --- -C- --- ... --- --- --- --- ---
------- F R 3 - I M G T -------------------------------------------------------------->
80 85 90 95 100
Example_H TCC AGA GAC AAT TCC AAG AAC ACG CTG TAT CTG CAA ATG AAC AGC CTG AGA GCT GAG GAC ACG GCT GTG TAT TAC TGT
humIGHV047 294 bp --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
humIGHV050 294 bp --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
humIGHV195 294 bp --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
humIGHV199 294 bp --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --C --- --- --- --- --- --- --- ---
humIGHV029 294 bp --- --- --- --- --- -C- --- --- --- -T- --- --- --- --- --- --- --- --C --- --- --- --- --- --- --- ---
___________ CDR3 - IMGT ___________ <-------------- FR4 - IMGT --------------->
105 109 114 120 125 130
Example_H GCG AGA GAT CGT TAC GGT ATG GAC GTC TGG GGC CAA GGG ACC ACG GTC ACC GTC TCC TCA GGG AGT GCA TCC GCC CCA
humIGHV047 294 bp --- ---
humIGHV050 294 bp --- ---
humIGHV195 294 bp --- ---
humIGHV199 294 bp --- ---
humIGHV029 294 bp --- ---
135 140 145
Example_H AAG CTT GAA GAA GGT GAA TTT TCA GAA GCA CGC GTA
humIGHV047 294 bp
humIGHV050 294 bp
humIGHV195 294 bp
humIGHV199 294 bp
humIGHV029 294 bp
Translation of the V segment (Example H)
<---------------------- F R 1 - I M G T ---------------------------------------------->
1 5 10 15 20 25
Q V Q L Q Q W G G G V V Q P G R S L R L S C A A S
Example_H CAG GTG CAG CTG CAG CAG TGG GGG GGA ... GGC GTG GTC CAG CCT GGG AGG TCC CTG AGA CTC TCC TGT GCA GCC TCT
V E S
humIGHV047 294 bp --- --- --- --- GT- G-- -CT --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
___________________ CDR1 - IMGT _______________ <------------------- F R 2 - I M G T
30 35 40 45 50
G F T F S S Y A M H W V R Q A P G K G L E W
Example_H GGA TTC ACC TTC AGT AGC TAT GCT ... ... ... ... ATG CAC TGG GTC CGC CAG GCT CCA GGC AAG GGG CTG GAG TGG
humIGHV047 294 bp --- --- --- --- --- --- --- --- ... ... ... ... --- --- --- --- --- --- --- --- --- --- --- --- --- ---
----------> ___________ CDR2 - IMGT _______________ <---------------------------------------------------
55 60 65 70 75
V A V I S Y D G S N K Y Y A D S V K G R F T I
Example_H GTG GCA GTT ATA TCA TAT GAT GGA AGC AAT AAA ... ... TAC TAC GCA GAC TCC GTG AAG ... GGC CGA TTC ACC ATC
humIGHV047 294 bp --- --- --- --- --- --- --- --- --T --- --- ... ... --- --- --- --- --- --- --- ... --- --- --- --- ---
------- F R 3 - I M G T -------------------------------------------------------------->
80 85 90 95 100
S R D N S K N T L Y L Q M N S L R A E D T A V Y Y C
Example_H TCC AGA GAC AAT TCC AAG AAC ACG CTG TAT CTG CAA ATG AAC AGC CTG AGA GCT GAG GAC ACG GCT GTG TAT TAC TGT
humIGHV047 294 bp --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
___________ CDR3 - IMGT ___________ <-------------- FR4 - IMGT --------------->
105 109 114 120 125 130
A R D R Y G M D V W G Q G T T V T V S S G S A S A P
Example_H GCG AGA GAT CGT TAC GGT ATG GAC GTC TGG GGC CAA GGG ACC ACG GTC ACC GTC TCC TCA GGG AGT GCA TCC GCC CCA
humIGHV047 294 bp --- ---
135 140 145
K L E E G E F S E A R V
Example_H AAG CTT GAA GAA GGT GAA TTT TCA GAA GCA CGC GTA
humIGHV047 294 bp
Back to the List of Sequence Analyses
CDR Comparison (Ordered by CDR3 and Amino Acid Identity)
------------------------- HEAVY CHAIN -------------------------->^^^<------------ LIGHT CHAIN --------------
----CDR1---> <--CDR2--> <----------------CDR3--------------->^^^<---CDR1---> <--CDR2--> <---CDR3----
Example ○ GFTFSSYA....___ISYDGSNK..___ARDRYGMDV............................___SSNIGSNT....___SNN.......___AAWDDSLNGVV
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Amino Acid Sequences in FASTA format
> Example L
LPVLTQPPSASGTPGQRVTISCSGSSSNIGSNTVNWYQQLPGTAPKLLIYSNNQRPSAVPDRFSGSKSGTSASLAISGLRSEDEGDYYCAAWDDSLNGVVFGGGTKLTVL
> Example H
QVQLQQWGGGVVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARDRYGMDVWGQGTTVTVSS
Nucleotide Sequences in FASTA format
> Example L
CTGCCTGTGCTGACTCAGCCCCCCTCAGCGTCTGGGACCCCCGGGCAGAGGGTCACCATCTCTTGTTCTGGAAGCAGCTCCAACATCGGAAGTAATACTGTAAACTGGTACCAGCAGCTCCCAGGAACGGCCCCCAAACTCCTCATCTATAGTAATAATCAGCGGCCCTCAGCGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCAGTGGGCTCCGGTCCGAGGATGAGGGTGATTATTACTGTGCAGCATGGGATGACAGCCTGAATGGTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
> Example H
CAGGTGCAGCTGCAGCAGTGGGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGCTATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGCAATAAATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGAGATCGTTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
Amino Acid Table in comma-separated values file format (file extension: .csv)
Name:,Notes / Problems:,V-Gene (VBASE2):,V-Gene (IMGT):,D-Gene (VBASE2):,D-Gene (IMGT):,J-Gene (VBASE2):,J-Gene (IMGT):,FR1:,CDR1:,FR2:,CDR2:,FR3:,CDR3:,FR4:,Amino acid sequence:
Example L,,humIGLV063,IGLV1-44*01,---,---,M15642 IGLJ3*01 (same score: M15641 IGLJ2*01),IGLJ3*01 (same score: IGLJ2*01),LPVLTQPPSASGTPGQRVTISCSGS,SSNIGSNT,VNWYQQLPGTAPKLLIY,SNN,QRPSAVPDRFSGSKSGTSASLAISGLRSEDEGDYYC,AAWDDSLNGVV,FGGGTKLTVL,LPVLTQPPSASGTPGQRVTISCSGSSSNIGSNTVNWYQQLPGTAPKLLIYSNNQRPSAVPDRFSGSKSGTSASLAISGLRSEDEGDYYCAAWDDSLNGVVFGGGTKLTVL
Example H,,humIGHV047,IGHV3-30*04,X13972 IGHD3-9*01inv (same score: X13972 IGHD3-3*01inv; X13972 IGHD5-12*01inv),IGHD3-9*01/inv (same score: IGHD3-3*01/inv; IGHD5-12*01/inv),X86355 IGHJ6*02,IGHJ6*02,QVQLQQWGGGVVQPGRSLRLSCAAS,GFTFSSYA,MHWVRQAPGKGLEWVAV,ISYDGSNK,YYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYC,ARDRYGMDV,WGQGTTVTVSS,QVQLQQWGGGVVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARDRYGMDVWGQGTTVTVSS
Nucleotide Table in comma-separated values file format (file extension: .csv)
Name:,Notes / Problems:,V-Gene (VBASE2):,V-Gene (IMGT):,D-Gene (VBASE2):,D-Gene (IMGT):,J-Gene (VBASE2):,J-Gene (IMGT):,V-FR1:,V-CDR1:,V-FR2:,V-CDR2:,V-FR3:,V-CDR3:,P1-CDR3:,N1-CDR3:,P2-CDR3:,D-CDR3:,P3-CDR3:,N2-CDR3:,P4-CDR3:,J-CDR3:,J-FR4:
Example L,,humIGLV063,IGLV1-44*01,---,---,M15642 IGLJ3*01 (same score: M15641 IGLJ2*01),IGLJ3*01 (same score: IGLJ2*01),CTGCCTGTGCTGACTCAGCCCCCCTCAGCGTCTGGGACCCCCGGGCAGAGGGTCACCATCTCTTGTTCTGGAAGC,AGCTCCAACATCGGAAGTAATACT,GTAAACTGGTACCAGCAGCTCCCAGGAACGGCCCCCAAACTCCTCATCTAT,AGTAATAAT,CAGCGGCCCTCAGCGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCAGTGGGCTCCGGTCCGAGGATGAGGGTGATTATTACTGT,GCAGCATGGGATGACAGCCTG,---,AATGG,,,,,---,TGTGGTA,TTCGGCGGAGGGACCAAGCTGACCGTCCTAG
Example H,,humIGHV047,IGHV3-30*04,X13972 IGHD3-9*01inv (same score: X13972 IGHD3-3*01inv; X13972 IGHD5-12*01inv),IGHD3-9*01/inv (same score: IGHD3-3*01/inv; IGHD5-12*01/inv),X86355 IGHJ6*02,IGHJ6*02,CAGGTGCAGCTGCAGCAGTGGGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCT,GGATTCACCTTCAGTAGCTATGCT,ATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTT,ATATCATATGATGGAAGCAATAAA,TACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGT,GCGAGA,---,G,---,ATCGT,---,---,---,TACGGTATGGACGTC,TGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
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Mutation Table (Beginning with the 15. Amino Acid)
Name:,Notes / Problems:,V-Gene (VBASE2):,V-Gene (IMGT):,D-Gene (VBASE2):,D-Gene (IMGT):,J-Gene (VBASE2):,J-Gene (IMGT):,Mutated Sequence:,V-Gene:,D-Gene:,J-Gene:,FR1:,CDR1:,FR2:,CDR2:,FR3:,V-CDR3:,D-CDR3:,J-CDR3:,FR4:
Example L,,humIGLV063,IGLV1-44*01,---,---,M15642 IGLJ3*01 (same score: M15641 IGLJ2*01),IGLJ3*01 (same score: IGLJ2*01),yes,4,---,0,0,0,0,0,4,0,---,0,0
Example H,,humIGHV047,IGHV3-30*04,X13972 IGHD3-9*01inv (same score: X13972 IGHD3-3*01inv; X13972 IGHD5-12*01inv),IGHD3-9*01/inv (same score: IGHD3-3*01/inv; IGHD5-12*01/inv),X86355 IGHJ6*02,IGHJ6*02,?,1,0,0,0,0,0,1,0,0,0,0,0
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Last program update: 24.10.08.